Index

A

accumulate_statistics() (ultranest.pathsampler.OtherSamplerProxy method) adapt_nsteps() (ultranest.stepsampler.StepSampler method) adapt_proposal_move_distances() (in module ultranest.stepsampler) adapt_proposal_move_distances_midway() (in module ultranest.stepsampler) adapt_proposal_summed_distances() (in module ultranest.stepsampler) adapt_proposal_summed_distances_NN() (in module ultranest.stepsampler) adapt_proposal_total_distances() (in module ultranest.stepsampler) adapt_proposal_total_distances_NN() (in module ultranest.stepsampler) add() (ultranest.netiter.PointPile method) (ultranest.ordertest.UniformOrderAccumulator method) (ultranest.plot.PredictionBand method) (ultranest.samplingpath.ContourSamplingPath method) (ultranest.samplingpath.SamplingPath method) (ultranest.store.HDF5PointStore method) (ultranest.store.NullPointStore method) (ultranest.store.TextPointStore method)

adjust_accept() (ultranest.pathsampler.SamplingPathSliceSampler method) (ultranest.pathsampler.SamplingPathStepSampler method) (ultranest.stepsampler.SliceSampler method) (ultranest.stepsampler.StepSampler method) adjust_nsteps() (ultranest.dychmc.DynamicCHMCSampler method) adjust_outside_region() (ultranest.pathsampler.SamplingPathSliceSampler method) (ultranest.pathsampler.SamplingPathStepSampler method) (ultranest.stepsampler.SliceSampler method) (ultranest.stepsampler.StepSampler method) adjust_scale() (ultranest.pathsampler.OtherSamplerProxy method) (ultranest.pathsampler.SamplingPathStepSampler method) adjust_stepsize() (ultranest.dychmc.DynamicCHMCSampler method) (ultranest.dyhmc.DynamicHMCSampler method) advance() (ultranest.popstepsampler.PopulationSliceSampler method) AffineLayer (class in ultranest.mlfriends) angle() (in module ultranest.samplingpath)

B

BallSliceSampler() (in module ultranest.stepsampler) bisect_at() (ultranest.flatnuts.ClockedBisectSampler method) bounding_ellipsoid() (in module ultranest.mlfriends) box_line_intersection() (in module ultranest.samplingpath)

BreadthFirstIterator (class in ultranest.netiter) build_tree() (in module ultranest.dychmc) (in module ultranest.dyhmc) (ultranest.flatnuts.ClockedNUTSSampler method)

C

check_gaps() (ultranest.flatnuts.DirectJumper method) (ultranest.flatnuts.SingleJumper method) ClockedBisectSampler (class in ultranest.flatnuts) ClockedNUTSSampler (class in ultranest.flatnuts) ClockedSimpleStepSampler (class in ultranest.flatnuts) ClockedStepSampler (class in ultranest.flatnuts) close() (ultranest.store.FilePointStore method) (ultranest.store.NullPointStore method) combine_results() (in module ultranest.netiter) compute_enlargement() (ultranest.mlfriends.MLFriends method) (ultranest.mlfriends.RobustEllipsoidRegion method) (ultranest.mlfriends.SimpleRegion method) (ultranest.mlfriends.WrappingEllipsoid method) compute_maxradiussq() (ultranest.mlfriends.MLFriends method) compute_mean_pair_distance() (in module ultranest.mlfriends) (ultranest.mlfriends.MLFriends method) compute_quantile_intervals() (in module ultranest.hotstart) compute_quantile_intervals_refined() (in module ultranest.hotstart)

continue_sampling() (ultranest.flatnuts.ClockedBisectSampler method) (ultranest.flatnuts.ClockedStepSampler method) ContourSamplingPath (class in ultranest.samplingpath) cornerplot() (in module ultranest.plot) count_tree() (in module ultranest.netiter) count_tree_between() (in module ultranest.netiter) create_ellipsoid() (ultranest.mlfriends.MLFriends method) (ultranest.mlfriends.SimpleRegion method) (ultranest.mlfriends.WrappingEllipsoid method) create_logger() (in module ultranest.utils) create_new() (ultranest.mlfriends.AffineLayer method) (ultranest.mlfriends.LocalAffineLayer method) (ultranest.mlfriends.MaxPrincipleGapAffineLayer method) (ultranest.mlfriends.ScalingLayer method) create_problem() (ultranest.dychmc.DynamicCHMCSampler method) (ultranest.dyhmc.DynamicHMCSampler method) crop_bracket_at_unit_cube() (in module ultranest.stepsampler) CubeMHSampler() (in module ultranest.stepsampler) CubeSliceSampler() (in module ultranest.stepsampler)

D

DirectJumper (class in ultranest.flatnuts) distances() (in module ultranest.samplingpath) distributed_work_chunk_size() (in module ultranest.utils)

drop_next_node() (ultranest.netiter.BreadthFirstIterator method) dump_tree() (in module ultranest.netiter) DynamicCHMCSampler (class in ultranest.dychmc) DynamicHMCSampler (class in ultranest.dyhmc)

E

ellipsoid_bracket() (in module ultranest.stepsampler) estimate_volume() (ultranest.mlfriends.MLFriends method) (ultranest.mlfriends.RobustEllipsoidRegion method) eval_at() (ultranest.flatnuts.ClockedStepSampler method) evolve() (in module ultranest.stepfuncs) evolve_prepare() (in module ultranest.stepfuncs) evolve_update() (in module ultranest.stepfuncs)

expand_children_of() (ultranest.netiter.BreadthFirstIterator method) expand_onestep() (ultranest.flatnuts.ClockedSimpleStepSampler method) expand_to() (ultranest.flatnuts.ClockedBisectSampler method) (ultranest.flatnuts.ClockedStepSampler method) expand_to_step() (ultranest.flatnuts.ClockedSimpleStepSampler method) extrapolate() (ultranest.samplingpath.ContourSamplingPath method) (ultranest.samplingpath.SamplingPath method) extrapolate_ahead() (in module ultranest.samplingpath)

F

far_enough_fraction (ultranest.stepsampler.StepSampler property) FilePointStore (class in ultranest.store) FILES_OPENED (ultranest.store.HDF5PointStore attribute) finalize_chain() (ultranest.stepsampler.StepSampler method) find_beta_params_dynamic() (in module ultranest.dyhmc)

find_beta_params_static() (in module ultranest.dyhmc) find_nearby() (in module ultranest.mlfriends) find_nodes_before() (in module ultranest.netiter) FlattenedProblem (class in ultranest.dyhmc) flush() (ultranest.store.FilePointStore method) (ultranest.store.NullPointStore method)

G

generate_cube_oriented_differential_direction() (in module ultranest.stepsampler) generate_cube_oriented_direction() (in module ultranest.popstepsampler) (in module ultranest.stepfuncs) (in module ultranest.stepsampler) generate_cube_oriented_direction_scaled() (in module ultranest.popstepsampler) (in module ultranest.stepfuncs) generate_differential_direction() (in module ultranest.stepfuncs) (in module ultranest.stepsampler) generate_direction() (ultranest.pathsampler.SamplingPathSliceSampler method) (ultranest.pathsampler.SamplingPathStepSampler method) generate_mixture_random_direction() (in module ultranest.stepfuncs) (in module ultranest.stepsampler) generate_momentum() (in module ultranest.dyhmc) (ultranest.dyhmc.FlattenedProblem method) generate_momentum_circle() (in module ultranest.dyhmc) generate_momentum_flattened() (in module ultranest.dyhmc) generate_momentum_normal() (in module ultranest.dyhmc) generate_partial_differential_direction() (in module ultranest.stepsampler) generate_random_direction() (in module ultranest.popstepsampler) (in module ultranest.stepfuncs) (in module ultranest.stepsampler)

generate_region_oriented_direction() (in module ultranest.popstepsampler) (in module ultranest.stepfuncs) (in module ultranest.stepsampler) generate_region_random_direction() (in module ultranest.popstepsampler) (in module ultranest.stepfuncs) (in module ultranest.stepsampler) generate_region_sample_direction() (in module ultranest.stepsampler) generate_uniform_direction() (in module ultranest.dychmc) get_auxiliary_contbox_parameterization() (in module ultranest.hotstart) get_auxiliary_problem() (in module ultranest.hotstart) get_default_viz_callback() (in module ultranest.viz) get_extended_auxiliary_independent_problem() (in module ultranest.hotstart) get_extended_auxiliary_problem() (in module ultranest.hotstart) get_independent_sample() (ultranest.flatnuts.ClockedSimpleStepSampler method) get_info_dict() (ultranest.stepsampler.StepSampler method) get_line() (ultranest.plot.PredictionBand method) get_point() (ultranest.pathsampler.SamplingPathStepSampler method) get_sphere_tangent() (in module ultranest.samplingpath) get_sphere_tangents() (in module ultranest.samplingpath) getp() (ultranest.netiter.PointPile method) getu() (ultranest.netiter.PointPile method) gradient() (ultranest.samplingpath.ContourSamplingPath method)

H

HDF5PointStore (class in ultranest.store)

I

infinite_U_zscore() (in module ultranest.ordertest) initialize() (ultranest.viz.LivePointsWidget method) insertion_order_converged (ultranest.netiter.MultiCounter property) insertion_order_runlength (ultranest.netiter.MultiCounter property) inside() (ultranest.mlfriends.MLFriends method) (ultranest.mlfriends.RobustEllipsoidRegion method) (ultranest.mlfriends.WrappingEllipsoid method) inside_ellipsoid() (ultranest.mlfriends.MLFriends method) inside_region() (in module ultranest.stepsampler)

interpolate() (in module ultranest.samplingpath) (ultranest.samplingpath.ContourSamplingPath method) (ultranest.samplingpath.SamplingPath method) IntervalJumper (class in ultranest.flatnuts) is_affine_transform() (in module ultranest.utils) is_done() (ultranest.flatnuts.ClockedSimpleStepSampler method) IslandPopulationRandomLivepointSelector (class in ultranest.stepsampler) isnotebook() (in module ultranest.viz) isunitlength() (in module ultranest.samplingpath)

L

leapfrog() (in module ultranest.dyhmc) line() (ultranest.plot.PredictionBand method) linear_steps_with_reflection() (in module ultranest.samplingpath) listify() (in module ultranest.utils) LivePointsWidget (class in ultranest.viz)

LocalAffineLayer (class in ultranest.mlfriends) logZ_bs (ultranest.netiter.MultiCounter property) logz_sequence() (in module ultranest.netiter) logZerr_bs (ultranest.netiter.MultiCounter property) logZremain (ultranest.netiter.SingleCounter property)

M

make_eigvals_positive() (in module ultranest.mlfriends) make_jump() (ultranest.flatnuts.DirectJumper method) (ultranest.flatnuts.IntervalJumper method) (ultranest.flatnuts.SingleJumper method) make_node() (ultranest.netiter.PointPile method) make_run_dir() (in module ultranest.utils) MaxPrincipleGapAffineLayer (class in ultranest.mlfriends) mean_jump_distance (ultranest.stepsampler.StepSampler property) MHSampler (class in ultranest.stepsampler) MLFriends (class in ultranest.mlfriends) modify_Lgrad() (ultranest.dyhmc.FlattenedProblem method) module ultranest ultranest.calibrator ultranest.dychmc ultranest.dyhmc ultranest.flatnuts ultranest.hotstart ultranest.integrator ultranest.mlfriends ultranest.netiter ultranest.ordertest ultranest.pathsampler ultranest.plot ultranest.popstepsampler ultranest.samplingpath ultranest.solvecompat ultranest.stepfuncs ultranest.stepsampler ultranest.store ultranest.utils ultranest.viz

move() (ultranest.dychmc.DynamicCHMCSampler method) (ultranest.dyhmc.DynamicHMCSampler method) (ultranest.pathsampler.SamplingPathSliceSampler method) (ultranest.pathsampler.SamplingPathStepSampler method) (ultranest.stepsampler.MHSampler method) (ultranest.stepsampler.SliceSampler method) (ultranest.stepsampler.StepSampler method) movei() (ultranest.pathsampler.SamplingPathStepSampler method) MultiCounter (class in ultranest.netiter)

N

nearest_box_intersection_line() (in module ultranest.samplingpath) NestedSampler (class in ultranest.integrator) new_chain() (ultranest.stepsampler.SliceSampler method) (ultranest.stepsampler.StepSampler method) next() (ultranest.flatnuts.ClockedBisectSampler method) (ultranest.flatnuts.ClockedNUTSSampler method) (ultranest.flatnuts.ClockedStepSampler method)

next_node() (ultranest.netiter.BreadthFirstIterator method) nicelogger() (in module ultranest.viz) normalised_kendall_tau_distance() (in module ultranest.utils) NullPointStore (class in ultranest.store)

O

optimize() (ultranest.mlfriends.AffineLayer method) (ultranest.mlfriends.ScalingLayer method)

optimize_wrap() (ultranest.mlfriends.ScalingLayer method) OrthogonalDirectionGenerator (class in ultranest.stepsampler) OtherSamplerProxy (class in ultranest.pathsampler)

P

passing_node() (ultranest.netiter.MultiCounter method) (ultranest.netiter.SingleCounter method) plot() (ultranest.calibrator.ReactiveNestedCalibrator method) (ultranest.dychmc.DynamicCHMCSampler method) (ultranest.dyhmc.DynamicHMCSampler method) (ultranest.integrator.NestedSampler method) (ultranest.integrator.ReactiveNestedSampler method) (ultranest.pathsampler.OtherSamplerProxy method) (ultranest.samplingpath.SamplingPath method) (ultranest.stepsampler.StepSampler method) plot_corner() (ultranest.integrator.ReactiveNestedSampler method) plot_jump_diagnostic_histogram() (ultranest.stepsampler.StepSampler method) plot_run() (ultranest.integrator.ReactiveNestedSampler method) plot_trace() (ultranest.integrator.ReactiveNestedSampler method)

PointPile (class in ultranest.netiter) pop() (ultranest.store.FilePointStore method) (ultranest.store.NullPointStore method) PopulationRandomWalkSampler (class in ultranest.popstepsampler) PopulationSimpleSliceSampler (class in ultranest.popstepsampler) PopulationSliceSampler (class in ultranest.popstepsampler) PredictionBand (class in ultranest.plot) prepare_jump() (ultranest.flatnuts.DirectJumper method) (ultranest.flatnuts.IntervalJumper method) (ultranest.flatnuts.SingleJumper method) print_diagnostic() (ultranest.stepsampler.StepSampler method) print_results() (ultranest.integrator.NestedSampler method) (ultranest.integrator.ReactiveNestedSampler method) print_tree() (in module ultranest.netiter) pymultinest_solve_compat() (in module ultranest.solvecompat)

Q

quantile() (in module ultranest.utils)

R

ReactiveNestedCalibrator (class in ultranest.calibrator) ReactiveNestedSampler (class in ultranest.integrator) read_file() (in module ultranest.integrator) reflect() (in module ultranest.samplingpath) (ultranest.pathsampler.SamplingPathStepSampler method) reflect_at() (ultranest.flatnuts.ClockedStepSampler method) region_changed() (ultranest.dychmc.DynamicCHMCSampler method) (ultranest.dyhmc.DynamicHMCSampler method) (ultranest.popstepsampler.PopulationRandomWalkSampler method) (ultranest.popstepsampler.PopulationSimpleSliceSampler method) (ultranest.popstepsampler.PopulationSliceSampler method) (ultranest.stepsampler.StepSampler method) RegionBallSliceSampler() (in module ultranest.stepsampler) RegionMHSampler() (in module ultranest.stepsampler) RegionSequentialSliceSampler() (in module ultranest.stepsampler) RegionSliceSampler() (in module ultranest.stepsampler) resample_equal() (in module ultranest.utils)

reset() (ultranest.flatnuts.ClockedNUTSSampler method) (ultranest.flatnuts.ClockedSimpleStepSampler method) (ultranest.netiter.BreadthFirstIterator method) (ultranest.netiter.MultiCounter method) (ultranest.netiter.SingleCounter method) (ultranest.ordertest.UniformOrderAccumulator method) (ultranest.samplingpath.SamplingPath method) (ultranest.store.FilePointStore method) (ultranest.store.NullPointStore method) reuse_samples() (in module ultranest.hotstart) reverse() (ultranest.flatnuts.ClockedSimpleStepSampler method) RobustEllipsoidRegion (class in ultranest.mlfriends) round_parameterlimits() (in module ultranest.viz) run() (ultranest.calibrator.ReactiveNestedCalibrator method) (ultranest.integrator.NestedSampler method) (ultranest.integrator.ReactiveNestedSampler method) run_iter() (ultranest.integrator.ReactiveNestedSampler method) runplot() (in module ultranest.plot)

S

sample() (ultranest.mlfriends.MLFriends method) (ultranest.mlfriends.RobustEllipsoidRegion method) sample_chain_point() (ultranest.flatnuts.ClockedNUTSSampler method) sample_from_boundingbox() (ultranest.mlfriends.MLFriends method) (ultranest.mlfriends.RobustEllipsoidRegion method) sample_from_points() (ultranest.mlfriends.MLFriends method) sample_from_transformed_boundingbox() (ultranest.mlfriends.MLFriends method) (ultranest.mlfriends.RobustEllipsoidRegion method) sample_from_wrapping_ellipsoid() (ultranest.mlfriends.MLFriends method) (ultranest.mlfriends.RobustEllipsoidRegion method) SamplingPath (class in ultranest.samplingpath) SamplingPathSliceSampler (class in ultranest.pathsampler) SamplingPathStepSampler (class in ultranest.pathsampler) ScalingLayer (class in ultranest.mlfriends) select_random_livepoint() (in module ultranest.stepsampler) SequentialDirectionGenerator (class in ultranest.stepsampler) SequentialRegionDirectionGenerator (class in ultranest.stepsampler) set_clusterids() (ultranest.mlfriends.ScalingLayer method) set_gradient() (ultranest.dychmc.DynamicCHMCSampler method) (ultranest.pathsampler.SamplingPathStepSampler method) set_lineargs() (ultranest.plot.PredictionBand method) set_nsteps() (ultranest.flatnuts.ClockedSimpleStepSampler method) set_shadeargs() (ultranest.plot.PredictionBand method)

set_transformLayer() (ultranest.mlfriends.MLFriends method) setup_brackets() (ultranest.popstepsampler.PopulationSliceSampler method) setup_start() (ultranest.popstepsampler.PopulationSliceSampler method) shade() (ultranest.plot.PredictionBand method) shift() (ultranest.popstepsampler.PopulationSliceSampler method) SimpleRegion (class in ultranest.mlfriends) SingleCounter (class in ultranest.netiter) SingleJumper (class in ultranest.flatnuts) SliceSampler (class in ultranest.stepsampler) SpeedVariableGenerator (class in ultranest.stepsampler) SpeedVariableRegionSliceSampler() (in module ultranest.stepsampler) start() (ultranest.pathsampler.SamplingPathStepSampler method) start_direction() (ultranest.pathsampler.OtherSamplerProxy method) start_path() (ultranest.pathsampler.SamplingPathStepSampler method) startup() (ultranest.pathsampler.OtherSamplerProxy method) status (ultranest.popstepsampler.PopulationSliceSampler property) step_back() (in module ultranest.stepfuncs) step_or_reflect() (in module ultranest.dychmc) StepSampler (class in ultranest.stepsampler) stop_criterion() (in module ultranest.dychmc) (in module ultranest.dyhmc) store_tree() (ultranest.integrator.ReactiveNestedSampler method) submasks() (in module ultranest.utils) subtract_nearby() (in module ultranest.mlfriends)

T

terminate_path() (ultranest.pathsampler.SamplingPathStepSampler method) TextPointStore (class in ultranest.store) traceplot() (in module ultranest.plot) transform() (ultranest.mlfriends.AffineLayer method) (ultranest.mlfriends.ScalingLayer method)

tree_sample() (in module ultranest.dychmc) (in module ultranest.dyhmc) TreeNode (class in ultranest.netiter)

U

ultranest module ultranest.calibrator module ultranest.dychmc module ultranest.dyhmc module ultranest.flatnuts module ultranest.hotstart module ultranest.integrator module ultranest.mlfriends module ultranest.netiter module ultranest.ordertest module ultranest.pathsampler module ultranest.plot module

ultranest.popstepsampler module ultranest.samplingpath module ultranest.solvecompat module ultranest.stepfuncs module ultranest.stepsampler module ultranest.store module ultranest.utils module ultranest.viz module UniformOrderAccumulator (class in ultranest.ordertest) untransform() (ultranest.mlfriends.AffineLayer method) (ultranest.mlfriends.ScalingLayer method) unwrap() (ultranest.mlfriends.ScalingLayer method) update_center() (ultranest.mlfriends.WrappingEllipsoid method) update_clusters() (in module ultranest.mlfriends) update_vectorised_slice_sampler() (in module ultranest.stepfuncs)

V

vectorize() (in module ultranest.utils) verify_gradient() (in module ultranest.utils)

vol_prefactor() (in module ultranest.mlfriends) (in module ultranest.utils)

W

warmstart_from_similar_file() (in module ultranest.integrator) within_unit_cube() (in module ultranest.stepfuncs)

wrap() (ultranest.mlfriends.ScalingLayer method) WrappingEllipsoid (class in ultranest.mlfriends)

Z

zscore (ultranest.ordertest.UniformOrderAccumulator property)